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2023 Emergent learning in physical systems as feedback-based aging in a glassy landscape Vidyesh Rao Anisetti, Ananth Kandala, J. M. Schwarz; arXiv:2309.04382. Mean-field elastic moduli of a three-dimensional, cell-based vertex model Kyungeun Kim, Tao Zhang, J. M. Schwarz; arXiv:2308.12892. Ionic Strength Alters Crosslinker-Driven Self-Organization of Microtubules Prashali Chauhan, Hong Beom Lee, Niaz Goodbee, Sophia Martin, Ruell Branch, Sumon Sahu, Jennifer M. Schwarz, Jennifer L. Ross, submitted. Angle-Preserving Transformations Give Rigidity Transitions a New Twist Jen Schwarz and Silke Henkes. Rectification of Random Walkers Induced by Energy Flow at Boundaries Vidyesh Rao Anisetti, Sharath Ananthamurthy, J. M. Schwarz; arXiv:2310.20115. A slime mold inspired local adaptive mechanism for flow networks Vidyesh Rao Anisetti, Ananth Kandala, J. M. Schwarz; arXiv:2309.16988. How human-derived brain organoids are built differently from brain organoids derived of genetically-close relatives: A multi-scale hypothesis Tao Zhang, Sarthak Gupta, Madeline A. Lancaster, J. M. Schwarz; arXiv:2304.08622. Cocaine diminishes functional network robustness and destabilizes the energy landscape of neuronal activity in the medial prefrontal cortex Ahmad Borzou, Sierra Miller, Jonathan Hommel, J. M. Schwarz, submitted. How cells wrap around virus-like particles using extracellular filamentous protein structures Sarthak Gupta, Christian D. Santangelo, Alison E. Patteson, J. M. Schwarz; arXiv: 2301.08776. 2022 Frequency propagation: Multi-mechanism learning in nonlinear physical networks Vidyesh Rao Anisetti, A. Kandala, B. Scellier, J. M. Schwarz; arXiv:2208.08862. Transcription regulates bleb formation and stability independent of nuclear rigidity Isabel K. Berg, Marilena L. Currey, Sarthak Gupta, Yasmin Berrada, Bao Nyugen Viet, Mai Pho, Alison E. Patteson, J. M. Schwarz, Edward J. Banigan, Andrew D. Stephens; bioRxiv:2022.11.14.516344. Rigidity transitions in zero-temperature polygons Mahesh Gandikota, Amanda Parker, J. M. Schwarz; arXiv:2204.09192; accepted to Phys. Rev. E (2022). A topologically-protected interior for three-dimensional confluent cellular collectives Tao Zhang and J. M. Schwarz, arXiv:2204.07081; accepted to Phys. Rev. Res. (2022). Learning by non-interfering feedback chemical signaling in physical networks Vidyesh Rao Anisetti, B. Scellier, J. M. Schwarz, arXiv:2203.12098; accepted to Phys. Rev. Res. (2022). Self-assembly of microtubule tactoids P. Chauhan, S. Sahu, N. Goodbee, S. Martin, H. B. Lee, R. Branch, J. M. Schwarz, J. L. Ross; accepted to JOVE (2022). 2021 Thermal Fluctuations of Singular Bar-Joint Mechanisms Manu Mannattil, J. M. Schwarz, Christian D. Santangelo; arXiv:2108.058241, accepted to Phys. Rev. Lett. Propagating irreversibility fronts in cyclically-sheared suspensions Jikai Wang, J. M. Schwarz, Joseph D. Paulsen; arXiv:2111.04279, accepted to Phys. Rev. Res. Effective medium theory of random regular networks Ojan Khatib Damavandi, M. Lisa Manning, J. M. Schwarz; arXiv:2110.04343, accepted to Europhys. Lett. Large-scale cortex-core formation in brain organoids Ahmad Borzou, J. M. Schwarz; arXiv:2108.058241, accepted to Front. Phys. Vimentin binds to SARS- CoV-2 spike protein and antibodies targeting extracellular vimentin block in vitro uptake of SARS-CoV-2 virus-like particles; Lukasz Suprewicz, Maxx Swoger, Sarthak Gupta, Ewelina Piktel, Fitzroy J. Byfield, Daniel V. Iwamoto, Danielle A. Germann, Joanna Reszec, Natalia Marcinczyk, Paul Janmey, J. M. Schwarz, Robert Bucki, Alison Patteson, published in Small, Biorxiv:2021.01.08.425793 (2021). A data-driven statistical description for the hydrodynamics of active matter Ahmad Borzou, Alison E. Patteson, J. M. Schwarz; arXiv:2103.03461; accepted to New J. Phys. (2021). Geometric signatures of tissue surface tension in a three-dimensional model of confluent tissue; Preeti Sahu, J. M. Schwarz, M. L. Manning; arXiv:2102.05397; accepted to New J. Phys. (2021). The role of vimentin-nuclear interactions in persistent cell motility through confined spaces Sarthak Gupta, Alison E. Patteson, J. M. Schwarz; arXiv:2103.09207; accepted to New J. Phys. (2021). Buckling without bending morphogenesis: Nonlinearities, spatial confinement, branching hierarchies M. C. Gandikota and J. M. Schwarz; arXiv:2102.08576; New J. Phys. 23, 063060 (2021). Cell nuclei as cytoplasmic rheometers Alison E. Patteson and J. M. Schwarz, Biophys. J. 120, 1535 (2021). 2020 Dynamic nuclear structure emerges from chromatin crosslinks and motors Kuang Liu, Alison E. Patteson, Edward J. Banigan, and J. M. Schwarz; arXiv:2008.07417; cover article; Phys. Rev. Lett. 126, 088002 (2021). How does the extracellular matrix affect the rigidity of an embedded spheroid? Amanda Parker, M. Cristina Marchetti, M. Lisa Manning, J. M. Schwarz, arXiv:2006.16203. Sponge-like rigid structures in frictional granular packings Kuang Liu, Jonathan E. Kollmer, Karen E. Daniels, J. M. Schwarz, and Silke Henkes; arXiv:2006.00557; cover article, Phys. Rev. Lett. 126 , 158101 (2021). 2019 Loops versus lines and the compression stiffening of cells, M. C. Gandikota, Katarzyna Pogoda, Anne van Oosten, T. A. Engstrom, A. E. Patteson, P. A. Janmey, J. M. Schwarz; arXiv:1908.03725, Soft Matter 16, 4389 (2020). Small-scale demixing in confluent biological tissues, Preeti Sahu, Daniel M. Sussman, Matthias Rubsam, Aaron F. Mertz, Valerie Horsley, Eric R. Dufresne, Carien M. Niessen, M. Cristina Marchetti, M. Lisa Manning, J. M. Schwarz; arXiv:1905.00657, Soft Matter 16, 3325 (2020). 2018 Rigidity percolation control of the brittle-ductile transitions in disordered networks, Estelle Berthier, Jonathan E. Kollmer, Silke Henkes, Kuang Liu, J. M. Schwarz, and Karen E. Daniels; arXiv:1812.07466, Phys. Rev. Mat. 3, 075602 (2019). Cerebellar folding is initiated by mechanical constraints on a fluid-like layer without a cellular pre-pattern, Andrew K. Lawton, Tyler Engstrom, Daniel Rohrbach, Masaaki Omura, Daniel H. Turnbull, Jonathan Mamou, Teng Zhang, J. M. Schwarz, and Alexandra L. Joyner, eLIFE 8, e45019 (2019). Frictional rigidity percolation: A new universality class and its superuniversal connections through minimal rigidity proliferation, Kuang Liu, Silke Henkes, and J. M. Schwarz, Phys. Rev. X 9, 021006 (2019). Buckling without bending: A new paradigm in morphogenesis, T. A. Engstrom, Teng Zhang, A. K. Lawton, A. L. Joyner, and J. M. Schwarz, Phys. Rev. X 8, 041053 (2018). Compression stiffening in biological tissues: on the possibility of classic elasticity origins, T. A. Engstrom, K. Pogoda, K. Cruz, P. A. Janmey, and J. M. Schwarz, accepted to Phys. Rev. E. (2019). 2017 Hyperuniformity with no fine tuning in sheared sedimenting suspensions, Jikai Wang, J. M. Schwarz, and Joseph D. Paulsen, Nat. Comm. 9, 2836 (2018). Soft yet sharp interfaces in a vertex model of confluent tissue, Daniel M. Sussman, J. M. Schwarz, M. Cristina Marchetti, and M. Lisa Manning, Phys. Rev. Lett. 120, 058001 (2018); Editor's Suggestion. Surface creasing of soft elastic continua as a Kosterlitz-Thouless transition, T. A. Engstrom and J. M. Schwarz, Europhys. Lett. 118, 56005 (2017). 2016 Chase-and-run dynamics in cell motility and the molecular rupture of interacting active elastic dimers, David Mayett, Nicholas Bitten, Moumita Das, and J. M. Schwarz, Phys. Rev. E 96, 032407 (2017). 2015 Rigid cluster decomposition reveals criticality in frictional jamming, Silke Henkes, David A. Quint, Y. Fily, and J. M. Schwarz, Phys. Rev. Lett. 116, 028301 (2016); made cover article Shape-shifting droplet networks, T. Zhang, Duanduan Wan, J. M. Schwarz, and M. J. Bowick, Phys. Rev. Lett. 116, 108301 (2016). 2014 A density-independent rigidity transition in biological tissues, Dapeng Bi, J. H. Lopez, J. M. Schwarz, and M. Lisa Manning, Nat. Phys. 11, 1074 (2015). The mechanics of anisotropic spring networks, T. Zhang, J. M. Schwarz, and Moumita Das, Phys. Rev. E 90, 062139 (2014). Elastic instabilities in a layered cerebral cortex: A revised axonal tension model for cortex folding, O. V. Manyuhina, David Mayett, and J. M. Schwarz, New J. Phys. 16, 123058 (2014). Active elastic dimers: Cells moving on rigid tracks, J. H. Lopez, Moumita Das, and J. M. Schwarz, Phys. Rev. E 90, 032707 (2014) (Editor's Suggestion). 2013 On the modeling of endocytosis in yeast, T. Zhang, R. Sknepnek, M. J. Bowick, and J. M. Schwarz, Biophys. J. 108, 508 (2015). Energy barriers govern glassy dynamics in tissues, Dapeng Bi, J. H. Lopez, J. M. Schwarz, and M. Lisa Manning, Soft Matt. 10, 1885 (2014). Jamming graphs: A local approach to global mechanical stability, J. H. Lopez, L. Cao, and J. M. Schwarz, Phys. Rev. E. 88, 062130 (2013). Contact processes in crowded environments , S.-L.-Y. Xu and J. M. Schwarz, Phys. Rev. E. 88, 052130 (2013). 2012 Comment on: "On the consistency of solutions of the space fractional Schrödinger equation" , E. Hawkins and J. M. Schwarz, J. Math. Phys. 54, 014101 (2013). Correlated percolation and tricriticality, L. Cao and J. M. Schwarz, Phys. Rev. E 86, 061131 (2012). Level statistics for quantum k-core percolation, L. Cao and J. M. Schwarz, Phys. Rev. B 86, 064206 (2012). Redundancy and cooperativity in the mechanics of compositely crosslinked filamentous networks, Moumita Das, D. A. Quint, and J. M. Schwarz, PLoS ONE 7(5): e35939 (2012). 2011 Vicious accelerating walkers, S.-L.-Y. Xu and J. M. Schwarz, Europhys. Lett. 96, 50009 (2011). Optimal orientation in branched cytoskeletal networks, D. A. Quint and J. M. Schwarz, J. Math. Biol. 63, 735 (2011). Modelling in vitro filopodia formation, K.-C. Lee, A. Gopinathan, and J. M. Schwarz, J. Math. Biol. 63, 229 (2011). 2010 On the study of force-balance percolation, M. Jeng and J. M. Schwarz, Phys. Rev. E 81, 011134 (2010). On the nonlocality of fractional Schrodinger equation, M. Jeng, S.-L.-Y. Xu, E. Hawkins and J. M. Schwarz, J. Math. Phys. 51, 062102 (2010). Quantum $k$-core conduction on the Bethe lattice, L. Cao and J. M. Schwarz, Phys. Rev. B 82, 104211 (2010). Force network analysis of a jammed solid, S.-L.-Y. Xu, X. Illa, and J. M. Schwarz, arXiv:1008.4568 (2010). Full arXiv List Google Scholar page |